Results for 'Ian G. Cowell'

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  1. Towards an Ontological Representation of Resistance: The Case of MRSA.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2011 - Journal of Biomedical Informatics 44 (1):35-41.
    This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. The treatments of resistance terms in various existing ontologies are examined and found to be either overly narrow, internally inconsistent, or otherwise problematic. We propose a more coherent characterization of resistance in terms of what we shall call blocking dispositions, which are collections of mutually coordinated dispositions which are of such a sort that they cannot undergo simultaneous realization within a single (...)
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  2. The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2021 - Journal of Biomedical Semantics 12 (13).
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...)
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  3. Constructing a lattice of Infectious Disease Ontologies from a Staphylococcus aureus isolate repository.Albert Goldfain, Lindsay G. Cowell & Barry Smith - 2012 - In Goldfain Albert, Cowell Lindsay G. & Smith Barry (eds.), Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).
    A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi‐automatically generate a set of application ontologies for specific subfamilies of Sa‐related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO‐Core and IDO‐extension reference ontologies. We show how this lattice can be used to define a strategy for the construction of a new (...)
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  4. Ontological representation of CDC Active Bacterial Core Surveillance Case Reports.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2014 - Proceedings of the Fifth International Conference on Biomedical Ontology 1327:74-77.
    The Center for Disease Control and Prevention’s Active Bacterial Core Surveillance (CDC ABCs) Program is a collaborative effort betweeen the CDC, state health departments, laboratories, and universities to track invasive bacterial pathogens of particular importance to public health [1]. The year-end surveillance reports produced by this program help to shape public policy and coordinate responses to emerging infectious diseases over time. The ABCs case report form (CRF) data represents an excellent opportunity for data reuse beyond the original surveillance purposes.
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  5. Coordinating virus research: The Virus Infectious Disease Ontology.John Beverley, Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He, Regina Hurley, Eric Merrell, Richard H. Scheuermann & Barry Smith - 2024 - PLoS ONE 1.
    The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...)
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  6. An improved ontological representation of dendritic cells as a paradigm for all cell types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  7. Beyond Structure: Using the Rational Force Model to Assess Argumentative Writing.Ylva Backman, Alina Reznitskaya, Viktor Gardelli & Ian A. G. Wilkinson - 2023 - Written Communication 40 (2):555–585.
    Current approaches used in educational research and practice to evaluate the quality of written arguments often rely on structural analysis. In such assessments, credit is awarded for the presence of structural elements of an argument, such as claims, evidence, and rebuttals. In this article, we discuss limitations of such approaches, including the absence of criteria for evaluating the quality of the argument elements. We then present an alternative framework, based on the Rational Force Model (RFM), which originated from the work (...)
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  8. Cinematic Representations of Facial Anomalies Across Time and Cultures.Connor Wagner, Clifford Ian Workman, Mariola Paruzel-Czachura, Satvika Kumar, Lauren Salinero, Carlos Barrero, Matthew Pontell, Jesse Taylor & Anjan Chatterjee - forthcoming - PsyArXiv Preprint:1-32.
    The “scarred villain” trope, where facial differences like scars signify moral corruption, is ubiquitous in film (e.g., Batman’s The Joker). Strides by advocacy groups to undermine the trope, however, suggest cinematic representations of facial differences could be improving with time. This preregistered study characterized facial differences in film across cultures (US vs. India) and time (US: 1980-2019, India: 2000-2019). Top-grossing films by country and decade were screened for characters with facial differences. We found that the scarred villain trope has actually (...)
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  9. Should CSR Give Atheists Epistemic Assurance? On Beer-Goggles, BFFs, and Skepticism Regarding Religious Beliefs.Justin L. Barrett & Ian M. Church - 2013 - The Monist 96 (3):311-324.
    Recent work in cognitive science of religion (CSR) is beginning to converge on a very interesting thesis—that, given the ordinary features of human minds operating in typical human environments, we are naturally disposed to believe in the existence of gods, among other religious ideas (e.g., seeAtran [2002], Barrett [2004; 2012], Bering [2011], Boyer [2001], Guthrie [1993], McCauley [2011], Pyysiäinen [2004; 2009]). In this paper, we explore whether such a discovery ultimately helps or hurts the atheist position—whether, for example, it lends (...)
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  10. The Face Image Meta-Database (fIMDb) & ChatLab Facial Anomaly Database (CFAD): Tools for research on face perception and social stigma.Clifford Ian Workman & Anjan Chatterjee - 2021 - Methods in Psychology 5 (100063):1-9.
    Investigators increasingly need high quality face photographs that they can use in service of their scholarly pursuits—whether serving as experimental stimuli or to benchmark face recognition algorithms. Up to now, an index of known face databases, their features, and how to access them has not been available. This absence has had at least two negative repercussions: First, without alternatives, some researchers may have used face databases that are widely known but not optimal for their research. Second, a reliance on databases (...)
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  11. External Conditions, Internal Rationality: Spinoza on the Rationality of Suicide.Ian MacLean-Evans - 2023 - Journal of Spinoza Studies 2 (1):40-63.
    I argue alongside some other scholars that there is a plausible reading of Spinoza’s philosophy of suicide which holds both of the following tenets: first, that suicides occur because of external conditions, and second, that there are at least some suicides which are rational. These two tenets require special attention because they seem to be the source of significant tension. For Spinoza, if one’s cognitions are to be the most adequate, they must be “disposed internally” (E2p29s/G II 114), or determined (...)
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  12. Do attitudes about and behaviors towards people who enhance their cognition depend on their looks?Charles Siegel, Clifford Ian Workman, Stacey Humphries & Anjan Chatterjee - forthcoming - PsyArXiv Preprint:1-29.
    Public attitudes towards cognitive enhancement––e.g., using stimulants like Adderall and Ritalin to improve mental functioning––are mixed. Attitudes vary by context and prompt ethical concerns about fairness, obligation, and authenticity/character. While people may have strong views about the morality of cognitive enhancement, how these views are affected by the physical characteristics of enhancers is unknown. Visible facial anomalies (e.g., scars) bear negatively on perceptions of moral character. This pre-registered study (osf[dot]io/uaw6c/) tested the hypothesis that such negative biases against people with facial (...)
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  13. Humility in Personality and Positive Psychology.Peter Samuelson & Ian M. Church - 2021 - In Mark Alfano, Michael Patrick Lynch & Alessandra Tanesini (eds.), The Routledge Handbook of the Philosophy of Humility. New York, NY: Routledge.
    A case could be made that the practice of philosophy demands a certain humility, or at least intellectual humility, requiring such traits as inquisitiveness, openness to new ideas, and a shared interest in pursuing truth. In the positive psychology movement, the study of both humility and intellectual humility has been grounded in the methods and approach of personality psychology, specifically the examination of these virtues as traits. Consistent with this approach, the chapter begins with a discussion of the examination of (...)
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  14. A New, Better BET: Rescuing and Revising Basic Emotion Theory.Michael David Kirchhoff, Daniel D. Hutto & Ian Robertson - 2018 - Frontiers in Psychology 9:1-12.
    Basic Emotion Theory, or BET, has dominated the affective sciences for decades (Ekman, 1972, 1992, 1999; Ekman and Davidson, 1994; Griffiths, 2013; Scarantino and Griffiths, 2011). It has been highly influential, driving a number of empirical lines of research (e.g., in the context of facial expression detection, neuroimaging studies and evolutionary psychology). Nevertheless, BET has been criticized by philosophers, leading to calls for it to be jettisoned entirely (Colombetti, 2014; Hufendiek, 2016). This paper defuses those criticisms. In addition, it shows (...)
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  15. Intelligibility is Necessary for Scientific Explanation, but Accuracy May Not Be.Mike Braverman, John Clevenger, Ian Harmon, Andrew Higgins, Zachary Horne, Joseph Spino & Jonathan Waskan - 2012 - In Naomi Miyake, David Peebles & Richard Cooper (eds.), Proceedings of the Thirty-Fourth Annual Conference of the Cognitive Science Society. Cognitive Science Society.
    Many philosophers of science believe that empirical psychology can contribute little to the philosophical investigation of explanations. They take this to be shown by the fact that certain explanations fail to elicit any relevant psychological events (e.g., familiarity, insight, intelligibility, etc.). We report results from a study suggesting that, at least among those with extensive science training, a capacity to render an event intelligible is considered a requirement for explanation. We also investigate for whom explanations must be capable of rendering (...)
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  16. The Comparative Studying of the Relations between Science and Religion in Ian Barbour and Mesbah's Perspective.Religious Thought, Mohammad Esmaeeli, Mohammad Sadegh Jamshidi Rad, Mohammad Reza Zamiri & Seyyed Hasan Bathayi Golpayegani - 2020 - JOURNAL OF RELIGIOUS THOUGHT 20 (77):51-78.
    The relation between science and religion has been one of the most important disturbance of scientists in recent centuries. Expressing thus issue was started in west countries since renaissance seriously and it expanded to all countries even Islamic countries. Mesbah as a philosopher and an Islamic scientist chooses completion idea which is based on his basis; e.g. philosophical foundations with reasonable relativity, paradigm acceptance which means thought basis, experience acceptance which means revelation and inspiration by innocent, monopoly on legitimacy acceptance (...)
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  17. La matemática mixta en las investigaciones de G. W. Leibniz.José Gustavo Morales - 2021 - Culturas Cientificas 2 (2):42-52.
    Para favorecer la interacción disciplinar y recuperar la dimensión práctica del conocimiento matemático en la escuela secundaria, Yves Chevallard plantea la necesidad de introducir en los programas de estudio la matemática mixta. La matemática mixta, cuyo apogeo tuvo lugar en Europa entre los siglos XVI y XVIII, se propone el abordaje de problemas surgidos por fuera de la propia matemática valiéndose de nociones mecánicas -como la de centro de gravedad y fuerza centrífuga- y del empleo de variados instrumentos para realizar (...)
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  18. (June 2019 to 2014) The UNBELIEVABLE similarities between the ideas of some people (2011-2016) and my ideas (2002-2008) in physics (quantum mechanics, cosmology), cognitive neuroscience, philosophy of mind, and philosophy.Gabriel Vacariu - manuscript
    COTENT -/- (April 2019) Why so many people (from so many countries/domains/on so many topics) have already plagiarized my ideas? (Gabriel Vacariu) -/- Some preliminary comments Introduction: The EDWs perspective in my article from 2005 and my book from 2008 -/- I. PHYSICS, COGNITIVE NEUROSCIENCE, PHILOSOPHY (‘REBORN DINOSAURS’) • (2016) Sean Carroll (California Institute of Technology, USA) • (2016) Frank Wilczek (Nobel Prize in Physics) • (2017-2019 - NEW March 2019) Carlo Rovelli in three books (2015, 2017) to my ideas (...)
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  19. (June 2019 to 2014) The UNBELIEVABLE similarities between the ideas of some people (2011-2016) and my ideas (2002-2008) in physics (quantum mechanics, cosmology), cognitive neuroscience, philosophy of mind, and philosophy.Gabriel Vacariu - manuscript
    COTENT -/- (April 2019) Why so many people (from so many countries/domains/on so many topics) have already plagiarized my ideas? (Gabriel Vacariu) -/- Some preliminary comments Introduction: The EDWs perspective in my article from 2005 and my book from 2008 -/- I. PHYSICS, COGNITIVE NEUROSCIENCE, PHILOSOPHY (‘REBORN DINOSAURS’) • (2016) Sean Carroll (California Institute of Technology, USA) • (2016) Frank Wilczek (Nobel Prize in Physics) • (2017-2019 - NEW March 2019) Carlo Rovelli in three books (2015, 2017) to my ideas (...)
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  20. The Ambiguous Legacy of Kuhn's Structure for Normative Philosophy of Science.Jonathan Y. Tsou - 2024 - In K. Brad Wray (ed.), Kuhn's The Structure of Scientific Revolutions at 60. Cambridge University Press. pp. 217-234.
    This chapter examines the legacy of Kuhn’s Structure for normative philosophy of science. As an argument regarding the history of 20th century philosophy of science, I contend that the main legacy of Structure was destructive: Structure shifted philosophy of science away from addressing general normative philosophical issues (e.g., the demarcation problem, empirical testability) towards more deflationary and local approaches to normative issues. This is evident in the first generation of post-Structure philosophers of science in the 1980s and 1990s, who adopted (...)
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  21. Relação e Efeitos Bioquímico-nutricionais Sobre a Retenção de Placenta em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE A RETENÇÃO DE PLACENTA EM VACAS -/- Emanuel Isaque Cordeiro da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim [email protected] ou [email protected] WhatsApp: (82)98143-8399 -/- •__1. Retenção de placenta -/- A retenção da placenta é uma anomalia reprodutiva de diferentes origens. Nos bovinos, caracteriza-se pela não expulsão dos anexos dos sacos placentários nas primeiras 12 horas após o parto. Os principais fatores que podem causar a retenção de placenta são: a) dificuldades no processo normal (...)
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  22. Reprodução Animal: Fisiologia do Parto e da Lactação Animal.Emanuel Isaque Cordeiro da Silva -
    FISIOLOGIA DO PARTO E DA LACTAÇÃO ANIMAL -/- ANIMAL REPRODUCTION: PHISIOLOGY OF PARTURITION AND ANIMAL LACTATION -/- Emanuel Isaque Cordeiro da Silva Departamento de Zootecnia da UFRPE WhatsApp: (82)98143-8399 -/- 1. INTRODUÇÃO O sucesso biológico do processo de reprodução culmina com a sobrevivência das crias. Durante a gestação, o feto desenvolve-se no útero materno protegido das influências externas, e obtendo os nutrientes e o oxigênio através da mãe. O parto é o processo biológico que marca o fim da gestação e (...)
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  23. Gametogênese Animal: Espermatogênese e Ovogênese.Emanuel Isaque Cordeiro da Silva - manuscript
    GAMETOGÊNESE -/- Emanuel Isaque Cordeiro da Silva Instituto Agronômico de Pernambuco Departamento de Zootecnia – UFRPE Embrapa Semiárido -/- • _____OBJETIVO -/- Os estudantes bem informados, estão a buscando conhecimento a todo momento. O estudante de Veterinária e Zootecnia, sabe que a Reprodução é uma área de primordial importância para sua carreira. Logo, o conhecimento da mesma torna-se indispensável. No primeiro trabalho da série fisiologia reprodutiva dos animais domésticos, foi abordado de forma clara, didática e objetiva os mecanismos de diferenciação (...)
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  24. Fisiologia da Reprodução Animal: Ovulação, Controle e Sincronização do Cio.Emanuel Isaque Cordeiro da Silva - manuscript
    UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO DEPARTAMENTO DE ZOOTECNIA – 50 ANOS EMANUEL ISAQUE CORDEIRO DA SILVA REPRODUÇÃO ANIMAL: OVULAÇÃO, CONTROLE E SINCRONIZAÇÃO -/- REPRODUÇÃO ANIMAL: OVULAÇÃO, CONTROLE E SINCRONIZAÇÃO DO CICLO ESTRAL -/- ANIMAL REPRODUCTION: OVULATION, CONTROL AND SYNCHRONIZATION OF THE ESTRAL CYCLE -/- Autor: Emanuel Isaque Cordeiro da Silva – IFPE-BJ/CAP-UFPE/EEFCC-BJ/UFRPE 1. INTRODUÇÃO As fêmeas dos animais domésticos possuem em seus ovários, desde praticamente o nascimento, a dotação completa de gametas dos quais vão dispor para o resto de sua (...)
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  25. Relação e Efeitos Bioquímico-nutricionais Sobre a Metrite em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE A METRITE EM VACAS -/- Emanuel Isaque Cordeiro da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim [email protected] ou [email protected] WhatsApp: (82)98143-8399 -/- •__3. METRITE -/- O transtorno caracterizado pela inflamação do útero, devido a causas sépticas ou assépticas que atuam sobre ele, denomina-se genericamente como metrite. As metrites são afecções de grande importância, tanto pela frequência como pela gravidade. As metrites podem ser divididas segundo seu caráter anatômico, como mucosa (catarral), purulenta, hemorrágica, crupal, (...)
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  26. Azoospermia em Bovinos: Principais Causas Nutricionais.Emanuel Isaque Cordeiro da Silva - manuscript
    NUTRIÇÃO SOBRE A AZOOSPERMIA EM BOVINOS -/- -/- E. I. C. da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim Departamento de Zootecnia – UFRPE sede -/- AZOOSPERMIA EM BOVINOS -/- INTRODUÇÃO -/- A falta completa de esperma no ejaculado pode ser devido a uma falha no processo de espermatogênese ou relacionada a causas no transporte do esperma. Com relação ao transporte, o esperma pode ser impedido de ser ejaculado mediante bloqueios ou oclusões no sistema do ducto extragonadal, ou (...)
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  27. Relação e Efeitos Bioquímico-nutricionais Sobre os Cios ou Estros Silenciosos em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE OS CIOS OU ESTROS SILENCIOSOS EM VACAS E. I. C. da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim Departamento de Zootecnia – UFRPE sede CIOS OU ESTROS SILENCIOSOS EM BOVINOS INTRODUÇÃO Um cio ou "estro silencioso" ocorre quando as mudanças ováricas são normais, mesmo com ovulação, mas não há comportamento estral. Isso não deve ser confundido com um estro não observado devido a falha na detecção do mesmo. A ocorrência do cio ou "estro (...)
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  28. Ovulação Retardada e Anovulação em Vacas: Causas Nutricionais.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE A OVULAÇÃO RETARDADA E A ANOVULAÇÃO EM VACAS -/- -/- Emanuel Isaque Cordeiro da Silva -/- Departamento de Agropecuária – IFPE Campus Belo Jardim -/- [email protected] ou [email protected] -/- WhatsApp: (82)98143-8399 -/- -/- 13. OVULAÇÃO RETARDADA -/- A ovulação retardada é uma situação de alteração fisiológica com diferentes origens. A falha em si, ocasiona assincronia nos tempos de liberação dos gametas. O óvulo é liberado tempo depois que os sinais corporais de estro terminaram, dessa forma, (...)
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  29. Relação e Efeitos Bioquímico-nutricionais Sobre o Cio ou Estro Permanente em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE O CIO OU ESTRO PERMANENTE EM VACAS -/- -/- E. I. C. da Silva -/- Departamento de Agropecuária – IFPE Campus Belo Jardim -/- Departamento de Zootecnia – UFRPE sede -/- -/- CIO OU ESTRO PERMANENTE EM BOVINOS -/- -/- INTRODUÇÃO -/- Quando se apresentam alterações na regulação estrogênica ou sobe a inibição dos folículos terciários, pode chegar-se a manifestações de cio ou estro prolongado ou permanente, sabendo-se que a duração normal e em média do (...)
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  30. Relação e Efeitos Bioquímico-nutricionais Sobre as Alterações do Corpo Lúteo em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE AS ALTERAÇÕES DO CORPO LÚTEO EM VACAS -/- Emanuel Isaque Cordeiro da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim [email protected] ou [email protected] WhatsApp: (82)98143-8399 -/- •__7. ALTERAÇÕES DO CORPO LÚTEO -/- A estrutura funcional desenvolve-se a partir da cavidade folicular após a ovulação. O corpo lúteo é constituído pelas células da teca interna (pequenas e ativas na primeira fase do seu desenvolvimento) e células da granulosa (grandes e ativas na segunda metade do seu (...)
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  31. Relação e Efeitos Bioquímico-nutricionais Sobre o Catarro Genital II e III em Vacas.Emanuel Isaque Cordeiro da Silva - manuscript
    RELAÇÃO E EFEITOS BIOQUÍMICO-NUTRICIONAIS SOBRE O CATARRO GENITAL II E III EM VACAS -/- Emanuel Isaque Cordeiro da Silva Departamento de Agropecuária – IFPE Campus Belo Jardim [email protected] ou [email protected] WhatsApp: (82)98143-8399 -/- 4. CATARRO GENITAL II E III -/- O catarro genital ou metrite (inflamação do miométrio) é uma inflamação inespecífica no trato genital. Existem duas barreiras que impedem a chegada de germes ao interior do trato genital. As barreiras de tipo hemático (diferença de fluxo sanguíneo) e imunossupressão parcial (...)
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  32. Infectious Disease Ontology.Lindsay Grey Cowell & Barry Smith - 2009 - In Lindsay Grey Cowell & Barry Smith (eds.), Infectious Disease Ontology. New York: Springer New York. pp. 373-395.
    Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and (...)
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  33.  1
    Infectious Disease Ontology.Lindsay Grey Cowell & Barry Smith - 2009 - In Lindsay Grey Cowell & Barry Smith (eds.), Infectious Disease Ontology. New York: Springer New York. pp. 373--395.
    Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and (...)
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  34. VO: Vaccine Ontology.Yongqun He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall, Barry Smith & Others - 2009 - In Barry Smith (ed.), ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo: NCOR.
    Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine (...)
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  35. Epistemic Corruption and Education.Ian James Kidd - 2019 - Episteme 16 (2):220-235.
    I argue that, although education should have positive effects on students’ epistemic character, it is often actually damaging, having bad effects. Rather than cultivating virtues of the mind, certain forms of education lead to the development of the vices of the mind - it is therefore epistemically corrupting. After sketching an account of that concept, I offer three illustrative case studies.
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  36. Humans Should Not Colonize Mars.Ian Stoner - 2017 - Journal of the American Philosophical Association 3 (3):334-353.
    This article offers two arguments for the conclusion that we should refuse on moral grounds to establish a human presence on the surface of Mars. The first argument appeals to a principle constraining the use of invasive or destructive techniques of scientific investigation. The second appeals to a principle governing appropriate human behavior in wilderness. These arguments are prefaced by two preliminary sections. The first preliminary section argues that authors working in space ethics have good reason to shift their focus (...)
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  37. Equal Opportunity and Newcomb’s Problem.Ian Wells - 2019 - Mind 128 (510):429-457.
    The 'Why ain'cha rich?' argument for one-boxing in Newcomb's problem allegedly vindicates evidential decision theory and undermines causal decision theory. But there is a good response to the argument on behalf of causal decision theory. I develop this response. Then I pose a new problem and use it to give a new 'Why ain'cha rich?' argument. Unlike the old argument, the new argument targets evidential decision theory. And unlike the old argument, the new argument is sound.
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  38. Dispositions and the Infectious Disease Ontology.Albert Goldfain, Barry Smith & Lindsay Cowell - 2010 - In Albert Goldfain, Barry Smith & Lindsay Cowell (eds.), Dispositions and the Infectious Disease Ontology. IOS Press. pp. 400-413.
    This paper addresses the use of dispositions in the Infectious Disease Ontology (IDO). IDO is an ontology constructed according to the principles of the Open Biomedical Ontology (OBO) Foundry and uses the Basic Formal Ontology (BFO) as an upper ontology. After providing a brief introduction to disposition types in BFO and IDO, we discuss three general techniques for representing combinations of dispositions under the headings blocking dispositions, complementary dispositions, and collective dispositions. Motivating examples for each combination of dispositions is given (...)
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  39. Dealbreakers and the Work of Immoral Artists.Ian Stoner - 2023 - Journal of the American Philosophical Association 9 (3):389-407.
    A dealbreaker, in the sense developed in this essay, is a relationship between a person's psychology and an aspect of an artwork to which they are exposed. When a person has a dealbreaking aversion to an aspect of a work, they are blocked from embracing the work's aesthetically positive features. I characterize dealbreakers, distinguish this response from other negative responses to an artwork, and argue that the presence or absence of a dealbreaker is in some cases an appropriate target of (...)
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  40. Epistemic Injustice and Illness.Ian James Kidd & Havi Carel - 2016 - Journal of Applied Philosophy 34 (2):172-190.
    This article analyses the phenomenon of epistemic injustice within contemporary healthcare. We begin by detailing the persistent complaints patients make about their testimonial frustration and hermeneutical marginalization, and the negative impact this has on their care. We offer an epistemic analysis of this problem using Miranda Fricker's account of epistemic injustice. We detail two types of epistemic injustice, testimonial and hermeneutical, and identify the negative stereotypes and structural features of modern healthcare practices that generate them. We claim that these stereotypes (...)
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  41. Inevitability, contingency, and epistemic humility.Ian James Kidd - 2016 - Studies in History and Philosophy of Science Part A 55:12-19.
    I reject both (a) inevitabilism about the historical development of the sciences and (b) what Ian Hacking calls the "put up or shut up" argument against those who make contingentist claims. Each position is guilty of a lack of humility about our epistemic capacities.
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  42. Clonal complexes in biomedical ontologies.Albert Goldfain, Lindsay Cowell & Barry Smith - 2009 - In Barry Smith (ed.), ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo: NCOR. pp. 168.
    An accurate classification of bacteria is essential for the proper identification of patient infections and subsequent treatment decisions. Multi-Locus Sequence Typing (MLST) is a genetic technique for bacterial classification. MLST classifications are used to cluster bacteria into clonal complexes. Importantly, clonal complexes can serve as a biological species concept for bacteria, facilitating an otherwise difficult taxonomic classification. In this paper, we argue for the inclusion of terms relating to clonal complexes in biomedical ontologies.
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  43. The Competition Account of Achievement‐Value.Ian D. Dunkle - 2019 - Pacific Philosophical Quarterly 100 (4):1018-1046.
    A great achievement makes one’s life go better independently of its results, but what makes an achievement great? A simple answer is—its difficulty. I defend this view against recent, pressing objections by interpreting difficulty in terms of competitiveness. Difficulty is determined not by how hard the agent worked for the end but by how hard others would need to do in order to compete. Successfully reaching a goal is a valuable achievement because it is difficult, and it is difficult because (...)
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  44. The Fundamental Problem with No-Cognition Paradigms.Ian B. Phillips & Jorge Morales - 2020 - Trends in Cognitive Sciences:1-2.
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  45. Do We See Through a Microscope?Ian Hacking - 1981 - Pacific Philosophical Quarterly 62 (4):305-322.
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  46. There Is No Knowledge From Falsehood.Ian Schnee - 2015 - Episteme 12 (1):53-74.
    A growing number of authors defend putative examples of knowledge from falsehood (KFF), inferential knowledge based in a critical or essential way on false premises, and they argue that KFF has important implications for many areas of epistemology (whether evidence can be false, the Gettier debate, defeasibility theories of knowledge, etc.). I argue, however, that there is no KFF, because in any supposed example either the falsehood does not contribute to the knowledge or the subject lacks knowledge. In particular, I (...)
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  47. What has episodic memory got to do with space and time?Ian Phillips - forthcoming - In Lynn Nadel & Sara Aronowitz (eds.), Space, Time, and Memory. Oxford University Press.
    It is widely held that episodic memory is constitutively connected with space and time. In particular, many contend that episodic memory constitutively has spatial and/or temporal content: for instance, necessarily representing a spatial scene, or when a given event occurred, or at the very minimum that it occurred in the past. Here, I critically assess such claims. I begin with some preparatory remarks on the nature of episodic memory. I then ask: How, if at all, is episodic memory constitutively spatial? (...)
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  48. Barbarous Spectacle and General Massacre: A Defence of Gory Fictions.Ian Stoner - 2020 - Journal of Applied Philosophy 37 (4):511-527.
    Many people suspect it is morally wrong to watch the graphically violent horror films colloquially known as gorefests. A prominent argument vindicating this suspicion is the Argument from Reactive Attitudes (ARA). The ARA holds that we have a duty to maintain a well-functioning moral psychology, and watching gorefests violates that duty by threatening damage to our appropriate reactive attitudes. But I argue that the ARA is probably unsound. Depictions of suffering and death in other genres typically do no damage to (...)
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  49. To race or not to race: A normative debate in the philosophy of race.Ian Shane Peebles - forthcoming - Philosophers' Imprint.
    One of the many debates in the philosophy of race is whether we should eliminate or conserve discourse, thought, and practices reliant on racial terms and categories (i.e., race-talk). In this paper, I consider this debate in the context of medicine. The recent resurgence in anti-racist activism and the COVID-19 pandemic have prompted philosophers, medical professionals, and the public to (re)consider race, its role in long-standing health disparities, and the utility of race-based medicine. In what follows, I argue that while (...)
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  50. The Doxastic Account of Intellectual Humility.Ian M. Church - 2016 - Logos and Episteme 7 (4):413-433.
    This paper will be broken down into four sections. In §1, I try to assuage a worry that intellectual humility is not really an intellectual virtue. In §2, we will consider the two dominant accounts of intellectual humility in the philosophical literature—the low concern for status account the limitations-owing account—and I will argue that both accounts face serious worries. Then in §3, I will unpack my own view, the doxastic account of intellectual humility, as a viable alternative and potentially a (...)
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